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SRX4548924: Illumina Sequencing of MET2077 Metagenomic Paired-end Library
2 ILLUMINA (Illumina HiSeq 2500) runs: 3.9M spots, 979.3M bases, 438.8Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of MET2077 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample:
SAMN09715404 • SRS3666186 • All experiments • All runs
Library:
Name: ASF2771_1_L14975064
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 2 runs, 3.9M spots, 979.3M bases, 438.8Mb
Run# of Spots# of BasesSizePublished
SRR76887691,752,228441.6M184.7Mb2018-10-12
SRR76887702,133,808537.7M254.1Mb2018-10-12

ID:
6155106

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